SNP Profiles of SLC 24 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
1._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
2._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
3._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
4._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
5._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
6._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
7._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
8._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
9._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
10._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
11._GC-08-093-2-16	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
12._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
13._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
14._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
15._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
16._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
17._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
18._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
19._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
20._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
21._SLC_24	GG	AT	AC	GT	CT	AA	CC	AG	CC	AT	GG	AA	CC	TT
22._GC-08-093-2-16	GG	AT	AC	GT	_	AA	CC	AG	CC	AT	GG	AA	CC	TT
23._SLC_24	GG	AT	AC	GT	_	AA	CC	AG	CC	AT	GG	AA	CC	TT
24._GC-08-093-2-16	GG	TT	CC	GG	CT	AC	CC	AA	CC	AA	AG	AG	AC	TT
25._SLC_24	GG	TT	CC	GG	CT	AC	CC	AA	CC	AA	AG	AG	AC	TT
26._SLC_24	GG	TT	CC	GG	CT	AC	CC	AA	CC	AA	AG	AG	AC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
1._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
2._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
3._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
4._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
5._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
6._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
7._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
8._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
9._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
10._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
11._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
12._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
13._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
14._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
15._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
16._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
17._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
18._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
19._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
20._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
21._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
22._GC-08-093-2-16	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
23._SLC_24	GT	CC	CC	CT	TT	CG	CC	GG	AA	TT	AG	CT	AA	AA
24._GC-08-093-2-16	GT	GG	CC	CT	GT	GG	CT	GG	TT	TT	AA	CC	AG	AT
25._SLC_24	GT	GG	CC	CT	GT	GG	CT	GG	TT	TT	AA	CC	AG	AT
26._SLC_24	GT	GG	CC	CT	GT	GG	CT	GG	TT	TT	AA	CC	AG	AT

	29	30	31	32	33	34	35	36	37	38
_Input profile	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
1._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
2._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
3._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
4._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
5._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
6._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
7._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
8._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
9._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
10._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
11._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
12._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
13._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
14._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
15._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
16._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
17._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
18._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
19._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
20._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
21._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
22._GC-08-093-2-16	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
23._SLC_24	TT	CT	GT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X	X_X	X_X
24._GC-08-093-2-16	CT	CC	TT	CT	AA	TT	CC	GG	AG	CT	X_X	X_X	X_X	X_X
25._SLC_24	CT	CC	TT	CT	AA	TT	CC	GG	AG	CT	X_X	X_X	X_X	X_X
26._SLC_24	CT	CC	TT	CT	AC	TT	CC	GG	AG	CT	X_X	X_X	X_X	X_X

Input profile: SLC_24

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 16

Dapeng Zhang, 2016

1._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 18

Notes: 18

2._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

3._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

4._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

5._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

8._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

11._SLC_24 GC-08-093-2-16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

12._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 5 > FP

Dapeng Zhang, 2016

13._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 2 > FP

Dapeng Zhang, 2016

14._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 18

Dapeng Zhang, 2016

15._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 14

Dapeng Zhang, 2016

16._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 12

Dapeng Zhang, 2016

17._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 10

Dapeng Zhang, 2016

18._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 9

Dapeng Zhang, 2016

19._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 8

Dapeng Zhang, 2016

20._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 7

Dapeng Zhang, 2016

21._SLC_24

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 6

Dapeng Zhang, 2016

22._SLC_24 GC-08-093-2-16

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 17

Notes: 17

23._SLC_24

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 17

Dapeng Zhang, 2016

24._SLC_24 GC-08-093-2-16

64.5 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

25._SLC_24

64.5 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8216 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

26._SLC_24

63.2 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 250

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP929	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1060	27	TcSNP1062	28	TcSNP1075	29	TcSNP1144	30	TcSNP1165
31	TcSNP1253	32	TcSNP1270	33	TcSNP1350	34	TcSNP1414	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484	38	TcSNP1520